ARNI: Algorithm for Revealing Network Interactions

Runner-up - DSWeb 2018 Software Contest

A model-independent algorithm for reconstructing the structural topology of network dynamical systems from time series, Model-free inference of direct network interactions from nonlinear collective dynamics, Nature Communications 8, 2017 (featured in the Complexity Research collection of Nature Communications).

BarrierTool

Honorable Mention - DSWeb 2019 Tutorials on DS Software Contest, Student Category

BarrierTool is a MATLAB package for the objective (observer-independent), automated identification of transport barriers in two-dimensional flows.

Brain Dynamics Toolbox - Getting Started

Honorable Mention - DSWeb 2019 Tutorials on DS Software Contest, Junior Faculty Category

This is a beginner-level training course for the Brain Dynamics Toolbox.

CIVET (Current-Inspired Visualization and Evaluation of the TASEP)

Runner-up - DSWeb 2018 Software Contest

A software package that provides a visualization of the dynamics associated with the generalized Totally Asymmetric Simple Exclusion Process (TASEP).

Classify Chimeras

Runner-up - DSWeb 2018 Software Contest

A Python Package which provides simple yet widely applicable functions to distinguish different kinds of chimera states, states of coexisting coherence and incoherence.

CMlib - Cell Mapping Algorithms in C++ (A Short Guide)

Runner-up - DSWeb 2019 Tutorials on DS Software Contest, Student Category

Library of cell mapping methods for the global analysis of dynamical systems.

COCO (Upgrades)

Prize Winner - DSWeb 2018 Software Contest, Senior Faculty/Professor Category

COCO is a MATLAB-based, object-oriented platform for constructing composite continuation problems, mapping out their solution manifolds, and locating special points on these manifolds.

DifferentialEquations.jl

Runner-up - DSWeb 2018 Software Contest

DifferentialEquations.jl is a metapackage for solving differential equations in the Julia programming language.

DynamicalSystems.jl (Julia)

Prize Winner - DSWeb 2018 Software Contest, Undergraduate/Graduate Student Category

DynamicalSystems.jl is a software library for the exploration of chaos and nonlinear dynamics. It is written entirely in Julia, a new programming language with large potential.

EMBER (Emergent and Macroscopic Behaviour ExtRaction)

Runner-up - DSWeb 2018 Software Contest

A generalised analysis tool for numerical continuation and bifurcation analysis of stochastic systems or those without a closed form solution or macroscopic equation of state.

emgr - EMpirical GRamian Framework

Compute empirical system Gramian matrices that quantify controllability, observability, minimality or identifiability of nonlinear input-output systems.

Insight Maker

Online program which supports model construction and simulation in the browser.

JuliaDynamics - Tutorials

Runner-up - DSWeb 2019 Tutorials on DS Software Contest, Student Category

Tutorials (videos, notebooks, documentation pages) that have been produced to guide the users of the JuliaDynamics organization into not only being able to use the packages provided, but also to be able to understand and study dynamical systems in depth.

LAPM, CompartmentalSystems, bc-md

Runner-up - DSWeb 2018 Software Contest

The python packages CompartmentalSystems, LAPM and bgc-md for the analysis of compartmental dynamical systems.

MatContM

Prize Winner - DSWeb 2019 Tutorials on DS Software Contest, Senior Faculty Category

A set of four tutorials for the toolbox MatContM.