EMBER (Emergent and Macroscopic Behaviour ExtRaction)

Runner-up - DSWeb 2018 Software Contest

A generalised analysis tool for numerical continuation and bifurcation analysis of stochastic systems or those without a closed form solution or macroscopic equation of state.

LAPM, CompartmentalSystems, bc-md

Runner-up - DSWeb 2018 Software Contest

The python packages CompartmentalSystems, LAPM and bgc-md for the analysis of compartmental dynamical systems.

CIVET (Current-Inspired Visualization and Evaluation of the TASEP)

Runner-up - DSWeb 2018 Software Contest

A software package that provides a visualization of the dynamics associated with the generalized Totally Asymmetric Simple Exclusion Process (TASEP).

tikz-network

Runner-up - DSWeb 2018 Software Contest

A tool to visualize complex networks in LaTeX.

ARNI: Algorithm for Revealing Network Interactions

Runner-up - DSWeb 2018 Software Contest

A model-independent algorithm for reconstructing the structural topology of network dynamical systems from time series, Model-free inference of direct network interactions from nonlinear collective dynamics, Nature Communications 8, 2017 (featured in the Complexity Research collection of Nature Communications).